Understanding the Technical-Scientific Gaps of Underutilized Tropical Species: The Case of Bactris gasipaes Kunth.

The extraction and commercialization of palm hearts is the most profitable activity involving the peach palm (Bactris gasipaes), while consumption of its fruits is limited to Amazonian communities. The excessive attention paid to the implementation of germplasm banks contributed to the lack of development of high-performance varieties, limiting the production and consumption of peach palm fruits and by-products. In addition, with the fragmentation of the Amazonian rainforest, wild populations are in danger of extinction. The species domestication, initiated by Native Amazonians, generated a large variety of peach palm populations, as evidenced by the diversity in fruit sizes and quality. Some advances in agronomic traits also took place. However, more research needs to be conducted to understand the implications of climatic changes on plant physiological performance. Indeed, the key point is that the exploitation of the full potential of B. gasipaes has not been completely exploited. Therefore, understanding the state-of-the-art research on the peach palm with a focus on its underutilized resources is essential for expanding plantations and, consequently, promoting the market expansion of the peach palm as a fruit crop.

Relationship between fruit phenotypes and domestication in hexaploid populations of biribá (Annona mucosa) in Brazilian Amazonia.

Background: Biribá (Annona mucosa Jacq.) is a fruit tree domesticated in Amazonia and has polyploid populations. The species presents ample phenotypic variation in fruit characteristics, including weight (100-4,000 g) and differences in carpel protrusions. Two cytotypes are recorded in the literature (2n = 28, 42) and genome size records are divergent (2C = 4.77, 5.42 and 6.00 pg). To decipher the role of polyploidy in the domestication of A. mucosa, we examined the relationships among phenotypic variation, chromosome number and genome size, and which came first, polyploidization or domestication. Methodology: We performed chromosome counts of A. mucosa from central and western Brazilian Amazonia, and estimated genome size by flow cytometry. We performed phylogenetic reconstruction with publicly available data using a Bayesian framework, time divergence analysis and reconstructed the ancestral chromosome number for the genus Annona and for A. mucosa. Results: We observed that variation in fruit phenotypes is not associated with variation in chromosome number and genome size. The most recent common ancestor of A. mucosa is inferred to be polyploid and diverged before domestication. Conclusions: We conclude that, when domesticated, A. mucosa was already polyploid and we suggest that human selection is the main evolutionary force behind fruit size and fruit morphological variation in Annona mucosa.

The complete plastid genome of Bactris riparia (Arecaceae) and a comparative analysis in Bactridinae (Cocoseae, Arecaceae).

Here we sequenced and characterized the complete plastome of Bactris riparia, a species closely related to B. gasipaes and widely distributed in Western Amazonia. We performed a comparative genomic analysis with B. riparia and the other four Bactridinae species retrieved from GenBank. The plastome of B. riparia was 156,715 bp with a quadripartite structure. Gene content included 86 protein-coding genes (CDS), 38 tRNAs, and 8 rRNAs. Bactris riparia has 69 more base pairs than B. gasipaes, with identical numbers in IR, and more in LSC and SSC. The comparative analysis indicated that structure, collinearity, and IR/SSC borders of plastomes within subtribe Bactridinae are, in general, conserved. We predicted 69 SSRs in B. riparia plastome. Among them, ~80% consisted of A/T homopolymers. Among the 52 variable CDS, rbcL showed the highest non-synonymous rate, while the rps15 gene had the highest synonymous rate. Three genes (ccsA, cemA, and rpoC1) presented evidence of positive selection and 22 genes showed evidence of purifying selection. The phylogenetic tree based on plastome sequences set Bactris as more closely related to Astrocaryum than to Acrocomia. These new plastome data of B. riparia will contribute to studies about the diversity, evolutionary history, and conservation of palms.

Maize dispersal patterns associated with different types of endosperm and migration of indigenous groups in lowland South America.

BACKGROUND AND AIMS: The lowlands of South America appear to be remarkably important in the evolutionary history of maize, due to new evidence that suggests that maize dispersed from Mexico and arrived in this region in a state of partial domestication. This study aimed to identify dispersal patterns of maize genetic diversity in this part of the continent. METHODS: A total of 170 maize accessions were characterized with 4398 single nucleotide polymorphisms (SNPs) and analysed to determine if maize dispersal was associated with types of endosperm and indigenous language families. KEY RESULTS: Four genetic groups were identified in the discriminant analysis of principal components and five groups in the cluster analysis (neighbour-joining method). The groups were structured according to the predominance of endosperm types (popcorn, floury, flint/semi-flint). Spatial principal component analysis of genetic variation suggests different dispersal patterns for each endosperm type and can be associated with hypotheses of expansions of different indigenous groups. CONCLUSIONS: From a possible origin in Southwestern Amazonia, different maize dispersal routes emerged: (1) towards Northern Amazonia, which continued towards the Caatinga and south-eastern Atlantic Forest (Floury); (2) towards Southern Brazil, passing through the Cerrado and Southern Atlantic Forest reaching the Pampa region (Floury); and (3) along the Atlantic Coast, following Tupi movements originating from two separate expansions: one (Tupinamba) from north to south, and the other (Guarani) in the opposite direction, from south to north (flint, floury and popcorn).

Tropical Trees as Time Capsules of Anthropogenic Activity.

After the ice caps, tropical forests are globally the most threatened terrestrial environments. Modern trees are not just witnesses to growing contemporary threats but also legacies of past human activity. Here, we review the use of dendrochronology, radiocarbon analysis, stable isotope analysis, and DNA analysis to examine ancient tree management. These methods exploit the fact that living trees record information on environmental and anthropogenic selective forces during their own and past generations of growth, making trees living archaeological 'sites'. The applicability of these methods across prehistoric, historic, and industrial periods means they have the potential to detect evolving anthropogenic threats and can be used to set conservation priorities in rapidly vanishing environments.

Highly structured genetic diversity of Bixa orellana var. urucurana, the wild ancestor of annatto, in Brazilian Amazonia.

Annatto (Bixa orellana L.) is a tropical American crop, commercially valuable due to its application in the food and cosmetics industries as a natural dye. The wild ancestor of cultivated annatto is B. orellana var. urucurana. Although never cultivated, this variety occurs in open forests and anthropogenic landscapes, and is always associated with riparian environments. In this study, we evaluated the genetic diversity and structure of B. orellana var. urucurana populations in Brazilian Amazonia using 16 microsatellite loci. We used Ecological Niche Modeling (ENM) to characterize the potential geographical range of this variety in northern South America. We analyzed 170 samples from 10 municipalities in the states of Rondônia, Pará and Roraima. A total of 194 alleles was observed, with an average of 12.1 alleles per locus. Higher levels of expected (HE) than observed (HO) heterozygosities were found for all populations. Bayesian analysis, Neighbor-Joining dendrograms and PCAs suggest the existence of three strongly structured groups of populations. A strong and positive correlation between genetic and geographic distances was found, suggesting that genetic differentiation might be caused by geographic isolation. From species distribution modelling, we detected that South Rondônia, Madre di Dios River basin, Llanos de Mojos, Llanos de Orinoco and eastern Ecuador are highly suitable areas for wild annatto to occur, providing additional targets for future exploration and conservation. Climatic adaptation analyses revealed strong differentiation among populations, suggesting that precipitation plays a key role in wild annatto's current and potential distribution patterns.

Local ecological knowledge concerning the invasion of Amerindian lands in the northern Brazilian Amazon by Acacia mangium (Willd.).

INTRODUCTION: Invasive plants can impact biodiversity as well as the lives of native human populations. Natural ecosystems represent sources of natural resources essential for the subsistence and socio-cultural continuity of these social groups. Approximately 30,000 ha of Acacia mangium were planted for commercial purposes in savanna areas surrounding indigenous lands in Roraima State, Brazil, at the end of the 1990s. We examined the local ecological knowledge of indigenous Wapichana and Macuxi Amerindians, members of the Arawak and Carib linguistic families, respectively, concerning A. mangium Willdenow (Fabaceae) in a savanna ecosystem ("Lavrado") to attempt to understand its propagation beyond the limits of the commercial plantations and contribute to mitigating its impacts on socio-ecological systems. METHODS: The present study was undertaken in the Moskow, São Domingos, and Malacacheta communities in the Moskow and Malacacheta Indigenous Lands (ILs) in the Serra da Lua region of Roraima State, in the northern Brazilian Amazon region. Interviews were conducted with a total of 94 indigenous individuals of both sexes, with ages between 18 and 76, and low levels of formal schooling, with an average time of permanence in the area of 21 years; some still spoke only their native languages. The interviews focused on their ecological knowledge of the invasive, non-native A. mangium and their uses of it. RESULTS: The informants affirmed that A. mangium negatively impacted the local fauna and flora, making their subsistence more difficult and altering their daily routines. Among the problems cited were alterations of water quality (71.3%), negative impacts on crops (60.6%), negative impacts on the equilibrium of the local fauna (52.1%), increased farm labor requirements (41.5%), and restriction of access to indigenous lands (23.4%). There were no significant differences between the opinions of men and women, nor between community leaders and nonleaders. Most of the interviewees (89%) felt that A. mangium had no positive importance for the local economy and saw no future prospects of beneficial use. CONCLUSIONS: The Wapichana and Macuxi informants felt that the invasion by A. mangium had caused negative effects on the natural environment and on community subsistence in the indigenous lands due to its rapid and unwanted propagation. The similarity between the opinions of men and women and between community leaders and nonleaders demonstrates the existence of knowledge that is well distributed among these communities and transmitted within their communities through social-cultural interactions.

Response to Comment on "Persistent effects of pre-Columbian plant domestication on Amazonian forest composition".

McMichael et al state that we overlooked the effects of post-Columbian human activities in shaping current floristic patterns in Amazonian forests. We formally show that post-Columbian human influences on Amazonian forests are indeed important, but they have played a smaller role when compared to the persistent effects of pre-Columbian human activities on current forest composition.

Efeito da aplicação de biocarvão, cama de frango e formulado NPK no estado nutricional foliar de laranjeira em terra mulata / Effect of biochar, poultry litter and NPK on the nutritional status leaf of orange on terra mulata

O cultivo de laranjeira em Terra Mulata tem apresentado limitações nutricionais sendo necessário o uso de adubos nas áreas agrícolas. A aplicação de biocarvão associado à outra fonte de nutrientes pode ser uma alternativa viável para aumentar a eficiência dos adubos e diminuir perdas nestas áreas. O objetivo deste trabalho foi avaliar o efeito do biocarvão, da cama de frango e do formulado NPK, no estado nutricional de laranjeiras Pera-Rio cultivadas em um Latossolo Amarelo distrófico com horizonte A antrópico (Terra Mulata). O estudo foi desenvolvido em uma propriedade rural de terra firme em Manacapuru (AM) em um delineamento de blocos casualizados com oito tratamentos utilizando biocarvão, cama de frango e formulado NPK (4-14-8) aplicados de maneira isolada e associados. Para avaliação foram retiradas duas amostras em períodos distintos de folhas para determinação do estado nutricional. Os adubos aplicados não aumentaram a eficiência na disponibilidade dos teores de N, P, Fe e Zn, ficando este último abaixo da faixa de teor adequado. Já para os teores de K, o adubo cama de frango e suas combinações aumentaram sua disponibilidade, e os maiores teores de Mg foram encontrados no tratamento controle.

Growing in orange on Terra Mulata has been submitted nutrient limitation requiring correction in agricultural areas. The application of biochar associated with another source of nutrients can be a viable alternative to increase the efficiency of fertilizers and reduce losses in the areas. The objective of this study was to evaluate the effect of biochar, poultry litter and NPK in the nutritional status of orange trees grown in an Oxisol with anthropogenic A horizon (Terra Mulata). The study was conducted in a rural property landfall in Manacapuru (AM) in a randomized block design with eight treatments using biochar, poultry litter and NPK (4-14-8) applied in isolation and associates. To review two samples were taken at different periods of sheets to determine the nutritional status. Fertilizers applied did not increase the efficiency in the availability of contents of N, P, Fe and Zn, being the latter below the range of suitable content. As for the K, compost chicken manure and their combinations increased their availability, and the highest levels of Mg were found in the control treatment.

Convergent adaptations: bitter manioc cultivation systems in fertile anthropogenic dark earths and floodplain soils in Central Amazonia.

Shifting cultivation in the humid tropics is incredibly diverse, yet research tends to focus on one type: long-fallow shifting cultivation. While it is a typical adaptation to the highly-weathered nutrient-poor soils of the Amazonian terra firme, fertile environments in the region offer opportunities for agricultural intensification. We hypothesized that Amazonian people have developed divergent bitter manioc cultivation systems as adaptations to the properties of different soils. We compared bitter manioc cultivation in two nutrient-rich and two nutrient-poor soils, along the middle Madeira River in Central Amazonia. We interviewed 249 farmers in 6 localities, sampled their manioc fields, and carried out genetic analysis of bitter manioc landraces. While cultivation in the two richer soils at different localities was characterized by fast-maturing, low-starch manioc landraces, with shorter cropping periods and shorter fallows, the predominant manioc landraces in these soils were generally not genetically similar. Rather, predominant landraces in each of these two fertile soils have emerged from separate selective trajectories which produced landraces that converged for fast-maturing low-starch traits adapted to intensified swidden systems in fertile soils. This contrasts with the more extensive cultivation systems found in the two poorer soils at different localities, characterized by the prevalence of slow-maturing high-starch landraces, longer cropping periods and longer fallows, typical of previous studies. Farmers plant different assemblages of bitter manioc landraces in different soils and the most popular landraces were shown to exhibit significantly different yields when planted in different soils. Farmers have selected different sets of landraces with different perceived agronomic characteristics, along with different fallow lengths, as adaptations to the specific properties of each agroecological micro-environment. These findings open up new avenues for research and debate concerning the origins, evolution, history and contemporary cultivation of bitter manioc in Amazonia and beyond.